Installation

You will need conda to install and run mBARq.

Important

It is highly recommended that you install mamba as it greatly speeds up the environment creation. You can read more on its installation here.

Note

Some of the mBARq dependencies can only run on Linux of MacOS, as a consequence mBARq will also not run on a Windows system.

Option 1

• Download this environment file and run

   mamba env create -f mbarq_environment_install.yaml
   conda activate mbarq
   mbarq --help

Option 2

• Clone the repository and create and activate the conda environment

   git clone https://github.com/MicrobiologyETHZ/mbarq.git
   cd mbarq
   mamba env create -f mbarq_environment.yaml
   conda activate mbarq
   pip install -e .
   mbarq --help