Installation

You will need conda to install and run mBARq.

Important

It is highly recommended that you install mamba as it greatly speeds up the environment creation.

conda install mamba -n base -c conda-forge

Option 1

• Download this environment file and run

   mamba env create -f mbarq_environment_install.yaml
   conda activate mbarq
   mbarq --help

Option 2

• Clone the repository and create and activate conda environment

   git clone https://github.com/MicrobiologyETHZ/mbarq.git
   cd mbarq
   mamba env create -f mbarq_environment.yaml
   conda activate mbarq
   pip install -e .
   mbarq --help